Miroirs/slackbuilds_ponce
1
0
Fork 0
mirror of https://github.com/Ponce/slackbuilds synced 2024-12-02 13:04:42 +01:00
Code Issues Projects Releases Packages Wiki Activity Actions

academic/copasi: Updated for version 4.18.136.

Browse source 
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
This commit is contained in:
Pedro Mendes 2016-11-30 20:51:14 +00:00 committed by Willy Sudiarto Raharjo
parent d20e4d268a
commit 004c02b09e
No known key found for this signature in database
GPG key ID: 887B8374D7333381
3 changed files with 22 additions and 21 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

18
academic/copasi/README
View file

@ -1,16 +1,16 @@
COPASI is a package for modeling and simulation of biochemical networks,
popular in the field of systems biology.
COPASI is a stand-alone program that simulates models of biochemical
networks using ODE solvers or Gillespie's stochastic simulation
algorithm. COPASI is compatible with models in SBML format. It also
performs several analyses, such as steady state, stability, parameter
sensitivity, elementary modes, Lyapunov exponents, optimization, and
parameter estimation. Data can be visualized in plots, histograms and
animations of network diagrams. COPASI's GUI is based on QT, but a
command line version is also included that allows for processing
COPASI is a stand-alone program that simulates models of biochemical
networks using ODE solvers or Gillespie's stochastic simulation
algorithm. COPASI is compatible with models in SBML format. It also
performs several analyses, such as steady state, stability, parameter
sensitivity, elementary modes, Lyapunov exponents, optimization, and
parameter estimation. Data can be visualized in plots, histograms and
animations of network diagrams. COPASI's GUI is based on QT, but a
command line version is also included that allows for processing
computations in batch mode.
COPASI is a collaboration between research groups at the Biocomplexity
Institute at Virginia Tech, University of Heidelberg, University of
Connecticut, University of Manchester, and previously the EML-Research.
Connecticut, University of Manchester and previously the EML-Research.

15
academic/copasi/copasi.SlackBuild
View file

@ -23,7 +23,7 @@
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=copasi
VERSION=${VERSION:-4.17.135}
VERSION=${VERSION:-4.18.136}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
@ -43,7 +43,7 @@ if [ "$ARCH" = "i586" ]; then
elif [ "$ARCH" = "x86_64" ]; then
BINNAME="Linux-64bit"
else
echo "$ARCH is not supported by the $PRGNAM build script."
echo "$ARCH is not supported by the $PRGNAM build script..."
exit 1
fi
@ -55,15 +55,16 @@ set -e
rm -rf $PKG
mkdir -p $TMP $PKG $OUTPUT
cd $TMP
rm -rf COPASI-$VERSION-$BINNAME
rm -rf COPASI-$VERSION-$BINNAME $PRGNAM-$VERSION
tar xvf $CWD/COPASI-$VERSION-$BINNAME.tar.gz
cd COPASI-$VERSION-$BINNAME
mv COPASI-$VERSION-$BINNAME $PRGNAM-$VERSION
cd $PRGNAM-$VERSION
chown -R root:root .
find -L . \
\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
-o -perm 511 \) -exec chmod 755 {} \; -o \
\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 -o -perm 511 \) \
-exec chmod 755 {} \; -o \
\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
mkdir -p $PKG/usr/bin $PKG/usr/share/{copasi,pixmaps,applications}
cp -a bin/* $PKG/usr/bin/

10
academic/copasi/copasi.info
View file

@ -1,10 +1,10 @@
PRGNAM="copasi"
VERSION="4.17.135"
VERSION="4.18.136"
HOMEPAGE="http://www.copasi.org"
DOWNLOAD="https://github.com/copasi/COPASI/releases/download/Build-135/COPASI-4.17.135-Linux-32bit.tar.gz"
MD5SUM="d3d03eb1e4b24613d930b9b2adec5ee7"
DOWNLOAD_x86_64="https://github.com/copasi/COPASI/releases/download/Build-135/COPASI-4.17.135-Linux-64bit.tar.gz"
MD5SUM_x86_64="af6285199dcf877ad3450333c2b93201"
DOWNLOAD="https://github.com/copasi/COPASI/releases/download/Build-136/COPASI-4.18.136-Linux-32bit.tar.gz"
MD5SUM="95e2fe76b8af522de162aff2f227ea78"
DOWNLOAD_x86_64="https://github.com/copasi/COPASI/releases/download/Build-136/COPASI-4.18.136-Linux-64bit.tar.gz"
MD5SUM_x86_64="ab43c0852be21f335ec77d71122a08f4"
REQUIRES=""
MAINTAINER="Pedro Mendes"
EMAIL="pedro@gepasi.org"