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27 lines
1.3 KiB
Text
27 lines
1.3 KiB
Text
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SeqKit - a cross-platform and ultrafast toolkit for FASTA/Q file
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manipulation
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FASTA and FASTQ are basic and ubiquitous formats for storing nucleotide
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and protein sequences. Common manipulations of FASTA/Q file include
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converting, searching, filtering, deduplication, splitting, shuffling,
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and sampling. Existing tools only implement some of these manipulations,
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and not particularly efficiently, and some are only available for
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certain operating systems. Furthermore, the complicated installation
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process of required packages and running environments can render these
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programs less user friendly.
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This project describes a cross-platform ultrafast comprehensive toolkit
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for FASTA/Q processing. SeqKit provides executable binary files for all
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major operating systems, including Windows, Linux, and Mac OS X, and can
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be directly used without any dependencies or pre-configurations. SeqKit
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demonstrates competitive performance in execution time and memory usage
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compared to similar tools. The efficiency and usability of SeqKit enable
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researchers to rapidly accomplish common FASTA/Q file manipulations.
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Note: This just repackages the binaries provided from upstream.
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Please cite:
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Wei Shen,Shuai Le,Yan Li ,Fuquan Hu. SeqKit: A Cross-Platform and
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Ultrafast Toolkit for FASTA/Q File Manipulation. October 5, 2016
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https://doi.org/10.1371/journal.pone.0163962
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