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12 lines
594 B
Text
12 lines
594 B
Text
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Burrows-Wheeler Aligner (BWA) is an efficient program that aligns
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relatively short nucleotide sequences against a long reference
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sequence such as the human genome. It implements two algorithms, bwa-
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short and BWA-SW. The former works for query sequences shorter than
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200bp and the latter for longer sequences up to around 100kbp. Both
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algorithms do gapped alignment. They are usually more accurate and
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faster on queries with low error rates.
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If you use BWA-SW, please cite:
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Li H. and Durbin R. (2010) Fast and accurate long-read alignment with
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Burrows-Wheeler Transform. Bioinformatics, Epub.
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