2015-03-27 01:57:59 +01:00
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#!/bin/sh
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# Slackware build script for fastqc
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# Copyright 2015 Petar Petrov petar.petrov@student.oulu.fi
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# All rights reserved.
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#
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# Redistribution and use of this script, with or without modification, is
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# permitted provided that the following conditions are met:
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#
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# 1. Redistributions of this script must retain the above copyright
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# notice, this list of conditions and the following disclaimer.
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#
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# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
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# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
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# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
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# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
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# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
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# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
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# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
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# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
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# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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PRGNAM=fastqc
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SRCNAM=FastQC
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2015-04-11 13:23:57 +02:00
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VERSION=${VERSION:-0.11.3}
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SRCVER=${SRCVER:-v0.11.3}
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2015-03-27 01:57:59 +01:00
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BUILD=${BUILD:-1}
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TAG=${TAG:-_SBo}
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ARCH=noarch
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# Jar files names and versions
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JBZIP=jbzip2-0.9.jar
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SAM=sam-1.103.jar
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2015-04-11 13:23:57 +02:00
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CISD=cisd-jhdf5.jar
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2015-03-27 01:57:59 +01:00
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CWD=$(pwd)
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TMP=${TMP:-/tmp/SBo}
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PKG=$TMP/package-$PRGNAM
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OUTPUT=${OUTPUT:-/tmp}
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set -e
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rm -rf $PKG
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mkdir -p $TMP $PKG $OUTPUT
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cd $TMP
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rm -rf $SRCNAM
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unzip $CWD/${PRGNAM}_${SRCVER}.zip
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cd $SRCNAM
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chown -R root:root .
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find -L . \
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\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
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-o -perm 511 \) -exec chmod 755 {} \; -o \
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\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
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-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
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install -D -m755 $PRGNAM $PKG/usr/share/java/$PRGNAM/$PRGNAM
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2015-04-11 13:23:57 +02:00
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cp -a Configuration net org Templates uk $JBZIP $SAM $CISD $PKG/usr/share/java/$PRGNAM
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2015-03-27 01:57:59 +01:00
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mkdir -p $PKG/usr/bin
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cd $PKG/usr/bin
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ln -s ../share/java/$PRGNAM/$PRGNAM
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cd -
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find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
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| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
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mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
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cp -a Help *.txt $PKG/usr/doc/$PRGNAM-$VERSION
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cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
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# Menu item and icon
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mkdir -p $PKG/usr/share/{applications,pixmaps}
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cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications
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cp $CWD/$PRGNAM.png $PKG/usr/share/pixmaps
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mkdir -p $PKG/install
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cat $CWD/slack-desc > $PKG/install/slack-desc
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cat $CWD/doinst.sh > $PKG/install/doinst.sh
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cd $PKG
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/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
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