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12 lines
664 B
Text
12 lines
664 B
Text
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StringTie is a fast and highly efficient assembler of RNA-Seq
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alignments into potential transcripts. It uses a novel network flow
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algorithm as well as an optional de novo assembly step to assemble and
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quantitate full-length transcripts representing multiple splice
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variants for each gene locus. Its input can include not only the
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alignments of raw reads used by other transcript assemblers, but also
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alignments longer sequences that have been assembled from those reads.
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In order to identify differentially expressed genes between
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experiments, StringTie's output can be processed by specialized
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software like Ballgown, Cuffdiff or other programs (DESeq2, edgeR).
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