mirror of
https://github.com/Ponce/slackbuilds
synced 2024-11-26 22:06:35 +01:00
15 lines
650 B
Text
15 lines
650 B
Text
|
CAP3: A DNA sequence assembly program.
|
||
|
|
|
||
|
|
CAP3 if the third generation of the CAP sequence assembly program. The
|
||
|
|
program has a capability to clip 5' and 3' low-quality regions of reads.
|
||
|
|
It uses base quality values in computation of overlaps between reads,
|
||
|
|
construction of multiple sequence alignments of reads, and generation
|
||
|
|
of consensus sequences. The program also uses forward-reverse constraints
|
||
|
|
to correct assembly errors and link contigs.
|
||
|
|
|
||
|
|
This just repackages the binaries provided from upstream.
|
||
|
|
|
||
|
|
If you use CAP3 in any published work, please cite:
|
||
|
|
Huang, X. and Madan, A. (1999) CAP3: A DNA sequence assembly program.
|
||
|
|
Genome Res., 9, 868-877.
|