mirror of
https://github.com/Ponce/slackbuilds
synced 2024-11-22 19:44:21 +01:00
18 lines
780 B
Text
18 lines
780 B
Text
|
PAML: Phylogenetic Analysis by Maximum Likelihood
|
||
|
|
|
||
|
|
PAML is a package of programs for phylogenetic analyses of DNA or
|
||
|
|
protein sequences using maximum likelihood. PAML is not good for tree
|
||
|
|
making. It may be used to estimate parameters and test hypotheses to
|
||
|
|
study the evolutionary process, when you have reconstructed trees
|
||
|
|
using other programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc.
|
||
|
|
|
||
|
|
Notes about running of PAML programs and the package:
|
||
|
|
|
||
|
|
- Example datasets are included in /usr/share/paml/examples
|
||
|
|
- Control files for PAML programs are in /usr/share/paml
|
||
|
|
- Additional executables are placed in /usr/libexec/paml
|
||
|
|
|
||
|
|
Suggested citation:
|
||
|
|
Yang, Z. 2007. PAML 4: a program package for phylogenetic analysis by
|
||
|
|
maximum likelihood. Molecular Biology and Evolution 24: 1586-1591
|