SlackBuildsOrg/academic
fourtysixandtwo 5e2d4835b3
academic/umfpack: Fix redundant deps.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-12-22 07:59:40 +07:00
..
3D-ICE
abntex
acl2 academic/acl2: Added (Computational Logic for LiSP). 2023-07-18 09:31:16 +07:00
aenig4
aeskulap
aline academic/aline: update source. 2023-09-11 22:18:50 +07:00
aliview
AlphaPlot
amd academic/amd: Align with template. 2023-05-20 11:17:28 +07:00
amplicon
amplifx academic/amplifx: Fix ARCH section. 2023-05-20 11:17:57 +07:00
antiprism
archaeopteryx
aris
arka
armadillo
arpack
arpack-ng academic/arpack-ng: Fix redundant deps. 2023-12-22 07:59:38 +07:00
artha
avl
avogadroapp academic/avogadroapp: Update README. 2023-11-06 06:10:13 +07:00
avogadrolibs academic/avogadrolibs: Update README. 2023-11-06 06:09:03 +07:00
bcftools academic/bcftools: Upgrade to version 1.18 2023-09-23 08:31:12 +07:00
bedGraphToBigWig
bedtools academic/bedtools: Updated for version 2.31.0. 2023-06-20 19:46:04 +07:00
biblesync
bibletime
bibus
biopython academic/biopython: Updated for version 1.81. 2023-04-22 11:38:31 +07:00
boinc academic/boinc: Fix rc.boinc variables, remove extraneous characters 2023-05-13 19:27:30 +07:00
bowtie
bowtie2 academic/bowtie2: upgrade to version 2.5.2 2023-11-08 00:00:31 +07:00
bowtie2-legacy
bpp-core
bpp-phyl
bpp-phyl-omics
bpp-popgen
bpp-seq
bpp-seq-omics
bpp1.9-numcalc
bpp1.9-phyl
bpp1.9-seq
bpp1.9-utils
bppsuite academic/bppsuite: Fix redundant deps. 2023-12-22 07:59:38 +07:00
btf academic/btf: Align with template. 2023-05-20 11:17:28 +07:00
bwa
cadabra2 academic/cadabra2: Updated for version 2.4.5. 2023-11-18 09:03:36 +07:00
CAFS_divergence academic/CAFS_divergence: Fix ARCH section. 2023-05-20 11:17:57 +07:00
calc academic/calc: Updated for version 2.14.1.5. 2023-05-27 08:08:51 +07:00
calcoo
camd academic/camd: Align with template. 2023-05-20 11:17:28 +07:00
cap3
CAPS_coevolution academic/CAPS_coevolution: Fix ARCH section. 2023-05-20 11:17:57 +07:00
cblas academic/cblas: Align with template. 2023-05-20 11:17:28 +07:00
ccolamd academic/ccolamd: Align with template. 2023-05-20 11:17:29 +07:00
cdo academic/cdo: Updated for version 2.3.0. 2023-10-21 17:20:14 +07:00
celestia
chartgeany
chemtool
cholmod academic/cholmod: Fix redundant deps. 2023-12-22 07:59:38 +07:00
cistrome-CEAS
cistrome-conductGO
cistrome-extra
cistrome-MACS academic/cistrome-MACS: update source. 2023-09-11 22:18:50 +07:00
cistrome-mdseqpos
clark-ugene
cld2
clustalo
clustalw
clustalx
colamd academic/colamd: Align with template. 2023-05-20 11:17:29 +07:00
colin academic/colin: Use template TMP assignment. 2023-05-20 11:17:27 +07:00
convertall
copasi academic/copasi: Updated for version 4.42.284. 2023-12-02 07:44:12 +07:00
cryptominisat
csparse academic/csparse: Align with template. 2023-05-20 11:17:29 +07:00
cufflinks
cutadapt
cvc4 academic/cvc4: Update dependencies. 2023-12-02 07:54:23 +07:00
cxsparse academic/cxsparse: Align with template. 2023-05-20 11:17:29 +07:00
dakota academic/dakota: Fix redundant deps. 2023-12-22 07:59:38 +07:00
Data2FCS
datamash
DendroPy
diamond
dimod
DRAMPower
DRAMSim2
DRAMsim3
DRAMSys
ds9 academic/ds9: Updated for version 8.4.1. 2023-02-04 07:19:56 +07:00
dwave-cloud-client
dwave-greedy
dwave-hybrid
dwave-inspector
dwave-neal academic/dwave-neal: Fix redundant deps. 2023-12-22 07:59:38 +07:00
dwave-networkx
dwave-ocean-sdk
dwave-preprocessing
dwave-system
dwave-tabu
dwavebinarycsp
easy_spice
ed-v6 Daves unified names 2023-05-06 08:28:36 +07:00
edsim51di
elk
EMBASSY
EMBOSS
engauge
ent
ephem academic/ephem: Added (an astronomy program). 2023-08-12 09:46:19 +09:00
eprover
equalx
ess
evopedia_qt
exonerate
extrema
fann
fastqc academic/fastqc: cleanup doinst.sh, info updated 2023-09-23 08:31:12 +07:00
FastTree academic/FastTree: Added (Infers approximately-ML phylogenetic). 2023-09-11 15:05:54 +07:00
FCSalyzer
fet academic/fet: Update LICENSE on README. 2023-12-13 01:48:21 +07:00
FigTree academic/FigTree: Add (A graphical viewer of phylogenetic trees). 2023-09-11 14:31:54 +07:00
fiji academic/fiji: Updated for version 20230801_1717. 2023-09-17 00:10:15 +07:00
finchtv academic/finchtv: Fix ARCH section. 2023-05-20 11:17:56 +07:00
fityk academic/fityk: Fix redundant deps. 2023-12-22 07:59:39 +07:00
flann
flexbar academic/flexbar: incl. patches for newer tbb 2023-11-08 00:02:01 +07:00
free42
FreeFem academic/FreeFem: Updated for version 4.14. 2023-12-13 01:48:21 +07:00
g3data academic/g3data: Fix DOWNLOAD. 2023-09-17 00:10:23 +07:00
Gabedit
gaiasky academic/gaiasky: Updated for version 3.5.7. 2023-11-11 08:07:55 +07:00
galculator
gaw3 academic/gaw3: Updated for version 20220315. 2023-04-01 09:14:08 +07:00
Gblocks academic/Gblocks: Update script. 2023-09-13 21:34:07 +07:00
gchemutils
gcompris-qt academic/gcompris-qt: Updated for version 3.3. 2023-06-10 09:28:37 +07:00
gdstk academic/gdstk: Added (GDSII / OASIS file library). 2023-12-09 07:50:06 +07:00
geda-gaf
gelemental academic/gelemental: Updated for version 2.0.2. 2023-04-22 11:38:28 +07:00
gem5
geneconv
genius
genometools
genpak
GeoGebra
geomview academic/geomview: Updated for version 1.9.5. 2023-02-04 07:19:52 +07:00
gephi academic/gephi: Added (Open Graph Viz Platform). 2023-07-19 10:00:21 +07:00
gerbv academic/gerbv: Orphaned. 2023-12-16 07:16:40 +07:00
getdp
getfem
ggobi
ghemical
glpk
glvis
gmsh
gnucap
gp2fasta
gpredict
grace
gresistor academic/gresistor: Align with template. 2023-05-20 11:17:29 +07:00
gretl
gri
Gridcoin-Research academic/Gridcoin-Research: Updated for version 5.4.5.0 2023-04-29 18:11:56 +07:00
gromacs academic/gromacs: Minor template nitpick. 2023-02-18 10:07:13 +07:00
grpn
gspiceui academic/gspiceui: Updated for version 1.2.87. 2023-06-03 10:38:23 +07:00
gtkwave
gtypist
gwyddion academic/gwyddion: Updated for version 2.64. 2023-11-04 16:39:16 +07:00
h5utils academic/h5utils: Updated for version 1.13.2. 2023-02-18 10:06:44 +07:00
harminv academic/harminv: Updated for version 1.4.2. 2023-02-18 10:06:44 +07:00
hdfview academic/hdfview: Added (visualization and exploration software). 2023-11-19 21:08:04 +07:00
HMMER academic/HMMER: Updated for version 3.4. 2023-09-13 21:53:45 +07:00
hyphy academic/hyphy: Updated for version 2.5.50. 2023-05-13 19:27:12 +07:00
IGV academic/IGV: Updated for version 2.16.2. 2023-09-17 00:10:15 +07:00
io_lib academic/io_lib: Updated for version 1.15.0. 2023-05-13 19:27:04 +07:00
iqtree academic/iqtree: Updated for version 2.2.2.7. 2023-09-13 21:53:07 +07:00
irsim
Isabelle academic/Isabelle: Added (proof assistant). 2023-07-18 08:47:19 +07:00
isoelectric-point
iTest
itex2mml
ITK
jalview academic/jalview: Updated for version 2.11.2.7. 2023-09-17 00:10:16 +07:00
jellyfish_k-mer
jpicedt
jugglinglab
kalign academic/kalign: Added (multipelsquence alignment program). 2023-09-11 14:39:00 +07:00
karma
klavaro
klu academic/klu: Fix redundant deps. 2023-12-22 07:59:39 +07:00
knime
kraken
Kst academic/Kst: Updated for version 20221025_5fdd819. 2023-02-22 12:09:51 +07:00
ktikz
kurso
labplot2 academic/labplot2: Fix double compilation. 2023-08-19 09:15:16 +07:00
ladr
laghos
lalnview
lammps academic/lammps: Added (molecular simulator). 2023-09-03 09:37:13 +07:00
lapack95
lapacke academic/lapacke: Align with template. 2023-05-20 11:17:30 +07:00
latex2html
ldl academic/ldl: Align with template. 2023-05-20 11:17:30 +07:00
libghemical
link-grammar
locarna
lpsolve
mafft academic/mafft: Updated for version 7.520. 2023-05-13 19:27:12 +07:00
magic
mathics
mathjax2 academic/mathjax2: Update maintainer's email 2023-06-04 23:13:23 +07:00
mathomatic
matio academic/matio: Updated for version 1.5.23. 2023-02-11 09:30:46 +07:00
maxima academic/maxima: Updated for version 5.47.0. 2023-07-02 21:01:11 +07:00
meep academic/meep: Fix redundant deps. 2023-12-22 07:59:39 +07:00
megax academic/megax: Fix and mv ARCH sect. 2023-05-20 11:17:56 +07:00
meme-db-gomo
meme-db-motif
meme-db-tgene
meme-suite academic/meme-suite: Updated for version 5.5.4. 2023-09-13 21:51:25 +07:00
mendeleydesktop academic/mendeleydesktop: Fix ARCH. 2023-06-03 10:38:30 +07:00
metalwalls
MetaPhlAn2
metis academic/metis: Align with template. 2023-05-20 11:17:30 +07:00
mfem
minorminer
mkDSSP
molequeue
mpb
mrbayes
mumsa
muscle
muscle5
ncbi-blast academic/ncbi-blast: Fix and mv ARCH sect. 2023-05-20 11:17:56 +07:00
ncbi-blast+ academic/ncbi-blast+: Updated for version 2.14.1. 2023-09-13 21:52:06 +07:00
ncbi-edirect academic/ncbi-edirect: Updated for version 20.5.20231007. 2023-10-14 10:32:26 +07:00
ncbi-rmblastn
nco academic/nco: Updated for version 5.1.9. 2023-11-11 08:08:33 +07:00
ncview
ngspice academic/ngspice: Updated for version 41. 2023-08-19 09:15:20 +07:00
novocraft
NWChem
octave academic/octave: Updated for version 8.3.0 2023-08-19 09:15:33 +07:00
openboard academic/openboard: Updated for version 1.7.0. 2023-12-13 01:48:16 +07:00
OpenFOAM
OpenMM
OpenVSP academic/OpenVSP: Moved from graphics. Updated for version 3.31.1. 2023-01-21 10:22:03 +07:00
pal2nal
paml academic/paml: Updated for version 4.10.6. 2023-04-22 11:38:27 +07:00
pamlX academic/pamlX: Fix paml docs dir. 2023-04-22 11:38:28 +07:00
papi
pari
parmetis
patsy
pcalc
pcb
penaltymodel
perlprimer
PhyML
pianobooster
plasmidomics
plus42 academic/plus42: Updated for version 1.0.21. 2023-08-26 19:07:00 +07:00
pomoxis academic/pomoxis: Added (bioinformatics tools for nanopore research) 2023-03-18 09:50:22 +07:00
prank-msa
primer3 academic/primer3: Updated for version 2.6.1. 2023-06-20 19:52:38 +07:00
pspp academic/pspp: Updated for version 1.6.2. 2023-03-04 07:16:37 +07:00
pulseview
PyAMG academic/PyAMG: Fix redundant deps. 2023-12-22 07:59:38 +07:00
pyCRAC academic/pyCRAC: Fix redundant deps. 2023-12-22 07:59:39 +07:00
pyfits academic/pyfits: Align with template. 2023-05-20 11:17:27 +07:00
pysam academic/pysam: set to use internal htslib 2023-09-23 08:31:12 +07:00
python2-kiwisolver academic/python2-kiwisolver: Align with template. 2023-05-20 11:17:41 +07:00
python2-scipy academic/python2-scipy: Align with template. 2023-05-20 11:17:41 +07:00
python3-ase academic/python3-ase: Fix redundant deps. 2023-12-22 07:59:39 +07:00
python3-scipy academic/python3-scipy: Fix redundant deps. 2023-12-22 07:59:39 +07:00
qalculate-gtk
qcl
qhull academic/qhull: Updated for version 8.0.2. 2023-12-01 08:55:49 +07:00
qrupdate academic/qrupdate: Fix redundant deps. 2023-12-22 07:59:40 +07:00
qucs
qucs-s academic/qucs-s: Updated for version 2.1.0. 2023-10-28 09:21:03 +07:00
R academic/R: update 4.3.2 2023-12-16 07:55:44 +07:00
ramulator
RAxML
rbio academic/rbio: Align with template. 2023-05-20 11:17:27 +07:00
reduce-algebra
RepeatMasker academic/RepeatMasker: Updated for version 4.1.5. 2023-09-17 00:10:17 +07:00
root academic/root: Updated for v6.28.08 2023-11-04 16:39:16 +07:00
rpy2 academic/rpy2: replace setup.py usage 2023-12-13 01:48:21 +07:00
sage academic/sage: Updated for 10.1 2023-09-29 10:35:53 +07:00
sage-bin
samtools academic/samtools: Upgrade to version 1.18 2023-09-23 08:31:12 +07:00
samtools-legacy
scidavis
scilab
scmutils academic/scmutils: Added (scm utils). 2023-11-29 18:35:27 +07:00
seaview academic/seaview: treerecs added to REQUIRES. 2023-04-22 11:38:31 +07:00
seqkit academic/seqkit: Updated for version 2.5.1. 2023-09-23 08:42:56 +07:00
SeqMonk
sequence-analysis
Shark
sigrok-cli
sim academic/sim: Added (local similarity program). 2023-09-11 22:18:38 +07:00
SimEng
siril
smath-studio
snpEff
solfege
spades academic/spades: Updated for version 3.15.5. 2023-04-21 09:30:46 +07:00
speedcrunch
spiceopus
spidey academic/spidey: Fix and mv ARCH sect. 2023-05-20 11:17:56 +07:00
spqr academic/spqr: Fix redundant deps. 2023-12-22 07:59:40 +07:00
squizz
staden academic/staden: A few enhancements. 2023-05-13 19:27:12 +07:00
STAR academic/STAR:Upgrade to version 2.7.11a 2023-09-23 08:31:13 +07:00
stellarium academic/stellarium: Updated for version 23.1. 2023-05-06 08:28:22 +07:00
stellarsolver
stringtie
SU2 academic/SU2: Add network warning to README. 2023-09-23 11:33:27 +07:00
suitesparse academic/suitesparse: Ensure correct linking 2023-11-25 22:12:39 +07:00
suitesparseconfig academic/suitesparseconfig: Align with template. 2023-05-20 11:17:30 +07:00
sundials
sword
sword-data-kjv academic/sword-data-kjv: Update data file. 2023-12-06 11:01:58 +07:00
t_coffee
tabix-legacy
tiemu academic/tiemu: New maintainer. 2023-02-25 09:18:10 +07:00
tilem
tilem2
tkgate
topdraw academic/topdraw: update source. 2023-09-11 22:18:50 +07:00
tophat
treebest-ensembl
TreeGraph
treerecs academic/treerecs: Added (Treerecs: a tree reconciliation tool) 2023-04-22 11:38:30 +07:00
treeviewx academic/treeviewx: update source. 2023-09-11 22:18:50 +07:00
trfind
trimmomatic
tuxmath
tuxtype2
ucsc-blat academic/ucsc-blat: Fix and mv ARCH sect, http->https. 2023-05-20 11:17:56 +07:00
ugene academic/ugene: Updated for version 48.1. 2023-09-17 00:10:15 +07:00
umfpack academic/umfpack: Fix redundant deps. 2023-12-22 07:59:40 +07:00
units academic/units: Fix paths and run install-info 2023-08-05 10:08:41 +07:00
vCAPS_coevolution
vcftools
velocyto academic/velocyto: Use correct github URL. 2023-03-25 10:02:01 +07:00
verilator
verilog
veusz
ViennaRNA academic/ViennaRNA: upgrade to version 2.6.4; edit README 2023-10-10 06:34:40 +07:00
voro++
wehi-cellsymphony
wehi-deid
wehi-hackit
wehi-weasel academic/wehi-weasel: Updated for version 3.8.0.18. 2023-09-17 00:10:15 +07:00
WEVOTE
wise academic/wise: Update script. 2023-09-23 08:42:56 +07:00
wmcalc
WolframEngine academic/WolframEngine: Updated for version 13.3.0. 2023-09-09 10:14:14 +07:00
WordNet
wxMaxima academic/wxMaxima: Use DESTDIR properly. 2023-07-08 16:41:57 +07:00
x48
xcircuit academic/xcircuit: Updated for version 3.10.30. New maintainer. 2023-03-25 10:01:45 +07:00
xephem academic/xephem: Updated for version 4.1.0. 2023-08-12 09:42:58 +09:00
xflr5 academic/xflr5: Updated for version 6.61. 2023-12-22 07:10:54 +07:00
xfoil
xiphos academic/xiphos: Update DEP. 2023-02-25 08:54:00 +07:00
xoscope academic/xoscope: Align with template. 2023-05-20 11:17:31 +07:00
xschem academic/xschem: Update script. 2023-12-06 10:09:31 +07:00
xsimd academic/xsimd: Correct email and clean up SlackBuild 2023-09-23 10:59:55 +07:00
yices2
z3
ZeGrapher
zotero academic/zotero: update 6.0.30 2023-12-16 07:44:41 +07:00
zotero-gtk2 academic/zotero-gtk2: Added (Collect and share research sources) 2023-05-06 08:28:23 +07:00