Willy Sudiarto Raharjo 33c88c01f6 academic/edsim51di: Update DEP. ... Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>		2019-05-30 09:57:35 +07:00
..
abntex
aenig4	academic/aenig4: Updated for version 1.04.	2018-11-03 07:46:38 +07:00
aline
aliview	academic/aliview: Updated for version 1.25.	2018-12-24 08:56:07 +07:00
amd	academic/amd: Updated for SuiteSparse 5.4.0.	2019-01-05 07:49:27 +07:00
amplicon
amplifx
antiprism
archaeopteryx	academic/archaeopteryx: Updated for version 0.9928b.	2018-12-24 08:56:55 +07:00
aris
arka
armadillo
arpack
arpack-ng	academic/arpack-ng: Updated for version 3.7.0.	2019-01-19 07:20:41 +07:00
artha
avl
avogadro
bcftools	academic/bcftools: Added (BCF calling tools).	2019-01-05 07:49:16 +07:00
bedGraphToBigWig
bedtools
biblesync
bibletime
bibus
boinc	academic/boinc: Updated for version 7.14.2.	2018-12-22 08:44:24 +07:00
bowtie
bowtie2	academic/bowtie2: Updated for version 2.3.5.1.	2019-05-11 07:13:50 +07:00
bowtie2-legacy	academic/bowtie2-legacy: Added (aligning sequencing reads).	2018-12-24 08:59:33 +07:00
bpp-core	academic/bpp-core: Updated for version 2.4.1.	2018-12-24 09:00:24 +07:00
bpp-phyl	academic/bpp-phyl: Updated for version 2.4.1.	2018-12-24 09:01:05 +07:00
bpp-phyl-omics	academic/bpp-phyl-omics: Updated for version 2.4.1.	2018-12-24 09:01:40 +07:00
bpp-popgen	academic/bpp-popgen: Updated for version 2.4.1.	2018-12-24 09:02:22 +07:00
bpp-seq	academic/bpp-seq: Updated for version 2.4.1.	2018-12-24 09:02:59 +07:00
bpp-seq-omics	academic/bpp-seq-omics: Updated for version 2.4.1.	2018-12-24 09:03:37 +07:00
bppsuite	academic/bppsuite: Updated for version 2.4.1.	2018-12-24 09:04:15 +07:00
btf	academic/btf: Updated for SuiteSparse 5.4.0.	2019-01-05 07:49:29 +07:00
bwa
cadabra2
CAFS_divergence
calc	academic/calc: Update to 2.12.7.2	2018-12-01 07:27:58 +07:00
calcoo
camd	academic/camd: Updated for SuiteSparse 5.4.0.	2019-01-05 07:49:27 +07:00
cap3
CAPS_coevolution
cblas
ccolamd	academic/ccolamd: Updated for SuiteSparse 5.4.0.	2019-01-05 07:49:28 +07:00
celestia
chemtool
cholmod	academic/cholmod: Updated for version 3.0.13.	2019-01-05 07:49:29 +07:00
cistrome-CEAS
cistrome-conductGO
cistrome-extra
cistrome-MACS
cistrome-mdseqpos
clark-ugene	academic/clark-ugene: Added (supervised sequence classification).	2018-12-24 09:09:59 +07:00
cld2
clustalo
clustalw
clustalx
colamd	academic/colamd: Updated for SuiteSparse 5.4.0.	2019-01-05 07:49:28 +07:00
convertall
copasi	academic/copasi: Updated for version 4.25.207.	2019-03-23 00:45:00 +07:00
coq
cryptominisat	academic/cryptominisat: Updated for version 5.6.8.	2019-03-24 09:56:46 +07:00
csparse	academic/csparse: Updated for SuiteSparse 5.4.0.	2019-01-05 07:49:28 +07:00
cufflinks	academic/cufflinks: Update DEPS.	2019-01-09 07:33:01 +07:00
cutadapt
cvc4	academic/cvc4: Add missing run-antlr.	2019-04-27 04:42:40 +07:00
cxsparse	academic/cxsparse: Updated for SuiteSparse 5.4.0.	2019-01-05 07:49:28 +07:00
dakota
Data2FCS
diamond	academic/diamond: Added (A sequence aligner).	2018-12-24 09:11:11 +07:00
drawtiming
ds9
easy_spice
ed-v6	academic/ed-v6: Added (old version of ed).	2019-03-23 07:54:36 +07:00
edsim51di	academic/edsim51di: Update DEP.	2019-05-30 09:57:35 +07:00
EMBASSY
EMBOSS
engauge	academic/engauge: Updated for version 10.10.	2018-10-21 06:45:27 +07:00
ent
eprover	academic/eprover: Added (a first-order theorem prover).	2019-02-23 07:47:50 +07:00
equalx
ess
evopedia_qt
exonerate
extrema
fann
fastqc	academic/fastqc: Updated for version 0.11.8 + new maintainer.	2018-12-22 00:03:06 -09:00
FCSalyzer	academic/FCSalyzer: Updated for version 0.9.16_alpha.	2018-12-24 08:54:20 +07:00
fet	academic/fet Updated for version 5.37.5.	2019-01-26 01:02:09 +07:00
fiji	academic/fiji: Added (ImageJ Distribution).	2018-12-24 22:16:55 +07:00
finchtv
fityk
flann
flashqard
flexbar	academic/flexbar: Updated for version 3.5.0.	2019-05-11 07:14:20 +07:00
free42
freechartgeany
g3data
galculator
gaw3
Gblocks
gcalctool
gchemutils
gcompris
geda-gaf
gelemental
geneconv
genius
genometools
genpak
GeoGebra	academic/GeoGebra: Update DEP.	2019-05-30 09:56:51 +07:00
geomview
gerbv
ggobi
ghemical
glpk
gnucap
gp2fasta
gpredict	academic/gpredict: Updated for version 2.3.	2019-01-18 23:39:51 +07:00
grace
gresistor
gretl
gri	academic/gri: Added (graphics language).	2019-04-12 22:37:58 +07:00
Gridcoin-Research	academic/Gridcoin-Research: Updated for version 4.0.4.0.	2019-05-17 23:45:17 +07:00
grpn
gspiceui
gtkwave
gtypist
gwyddion	academic/gwyddion: Updated for version 2.53.	2019-03-16 06:53:18 +07:00
HMMER
hyphy	academic/hyphy: Updated for version 2.3.14.	2018-12-24 22:16:52 +07:00
io_lib
irsim
isoelectric-point	academic/isoelectric-point: Update homepage and download.	2018-12-01 07:27:43 +07:00
iTest
itex2mml
ITK	academic/ITK: Updated for version 4.13.2.	2019-05-04 09:06:47 +07:00
jalview
jellyfish_k-mer	academic/jellyfish_k-mer: Added (k-mers counting tools).	2018-12-25 05:33:47 +07:00
jpicedt
jugglinglab
karma
kile
kiwisolver	academic/kiwisolver: Added (Cassowary algorithm).	2018-11-03 07:45:00 +07:00
klavaro
klu	academic/klu: Updated for SuiteSparse 5.4.0.	2019-01-05 07:49:29 +07:00
knime
kraken	academic/kraken: Added (Assigning Taxonomic Labels).	2018-12-25 05:38:56 +07:00
Kst
ktikz
kurso
labplot2
ladr	academic/ladr: Switch homepage and download to https.	2018-10-06 07:25:21 +07:00
lalnview
lapack95
lapacke	academic/lapacke: Build the deprecated routines.	2019-02-02 08:12:07 +07:00
ldl	academic/ldl: Updated for SuiteSparse 5.4.0.	2019-01-05 07:49:28 +07:00
libghemical
libqalculate	academic/libqalculate: Updated for version 2.9.0	2019-02-17 21:56:37 +07:00
link-grammar
locarna	academic/locarna: Added (Local RNA alignment on structural basis).	2019-04-12 23:12:41 +07:00
loggerpro
lpsolve
mafft	academic/mafft: Updated for version 7.407.	2018-12-24 09:15:34 +07:00
magic
mathics
mathomatic
matio
maxima
megax	academic/megax: Updated for version 10.0.5_1.	2018-12-24 09:21:25 +07:00
meme-suite
mendeleydesktop
metis
mkDSSP
Mnemosyne	academic/Mnemosyne: Updated for version 2.6.1.	2019-02-02 11:57:59 +07:00
mpmath
mrbayes
muscle
ncbi-blast	academic/ncbi-blast: Update script.	2018-12-24 09:24:23 +07:00
ncbi-blast+	academic/ncbi-blast+: Updated for version 2.8.1.	2019-01-24 07:48:59 +07:00
ncbi-rmblastn	academic/ncbi-rmblastn: Update DEP.	2018-12-24 22:16:58 +07:00
ncview
ngspice	academic/ngspice: Update script.	2019-02-08 20:58:29 +07:00
novocraft	academic/novocraft: Updated for version 3.09.02.	2019-04-13 05:51:01 +07:00
octave	academic/octave: Update DEP.	2019-04-12 02:42:43 +07:00
OpenFOAM
pal2nal
paml
pamlX
papi
pari	academic/pari: Updated for version 2.11.1.	2019-01-05 07:49:21 +07:00
parmetis
patsy
pcb
perlprimer
PhyML
pianobooster
plasmidomics
prank-msa
primer3
pspp	academic/pspp: Updated for version 1.2.0.	2018-11-27 08:22:03 +07:00
pulseview	academic/pulseview: Updated for version 0.4.1.	2018-12-16 16:24:58 +07:00
PyAMG
pyCRAC	academic/pyCRAC: Updated for version 1.4.4.	2019-04-13 06:29:59 +07:00
pyfits	academic/pyfits: Update homepage.	2018-12-01 07:27:41 +07:00
pysam	academic/pysam: Updated for version 0.15.2.	2019-01-18 23:39:54 +07:00
qalculate-gtk	academic/qalculate-gtk: Updated for version 2.9.0	2019-02-17 21:56:38 +07:00
qcl
qhull
qrupdate	academic/qrupdate: Update URLs and patches.	2019-01-05 07:49:30 +07:00
QtiPlot
qtoctave
qucs
R	academic/R: Updated for version 3.6.0.	2019-04-27 04:53:52 +07:00
rbio	academic/rbio: Updated for SuiteSparse 5.4.0.	2019-01-05 07:49:29 +07:00
reduce-algebra	academic/reduce-algebra: Updated for version 20180920svn4765.	2018-09-21 21:40:29 +01:00
RepeatMasker	academic/RepeatMasker: Updated for version 4.0.8.	2018-12-24 08:55:30 +07:00
root
sage
sage-bin
samtools	academic/samtools: Updated for version 1.9 + new maintainer.	2019-01-05 07:49:17 +07:00
samtools-legacy	academic/samtools-legacy: Fix path.	2019-01-09 07:31:53 +07:00
scidavis	academic/scidavis: Updated for version 1.25.	2019-03-16 06:53:22 +07:00
scilab
scipy	academic/scipy: Update script.	2019-02-08 20:25:34 +07:00
scipy3	academic/scipy3: Updated for version 1.1.0.	2019-02-08 20:26:26 +07:00
seaview
sequence-analysis
Shark
sigrok-cli	academic/sigrok-cli: Updated for version 0.7.1.	2018-12-16 16:24:13 +07:00
siril
slatec
smath-studio
snpEff
solfege
spades	academic/spades: Updated for version 3.13.0.	2018-12-24 10:55:58 +07:00
speedcrunch
spiceopus
spidey
spqr	academic/spqr: Updated for version 2.0.9.	2019-01-05 07:49:30 +07:00
squizz
staden
STAR	academic/STAR: Updated for version 2.7.1a.	2019-05-27 09:13:01 +07:00
stellarium
stringtie	academic/stringtie: Added (Assembler of RNA-Seq alignments).	2018-12-24 22:16:51 +07:00
SU2	academic/SU2: Added (Open Source CFD Code).	2019-03-16 06:53:25 +07:00
suitesparse	academic/suitesparse: Updated for version 5.4.0	2019-02-17 21:56:39 +07:00
suitesparseconfig	academic/suitesparseconfig: Updated for version 5.4.0.	2019-01-05 07:49:27 +07:00
sundials
sword
sword-data-kjv
sympy	academic/sympy: Updated for version 1.3.	2019-02-09 00:11:38 +07:00
t_coffee
tabix
tabix-legacy	academic/tabix-legacy: Added (Generic indexer).	2018-12-24 22:16:45 +07:00
tilem
tilem2
tkgate
topdraw
tophat
TreeGraph
treeviewx
trfind
trimmomatic	academic/trimmomatic: Added (Trimming Tool).	2018-12-24 22:16:59 +07:00
tuxmath
tuxtype2
ucsc-blat
ugene	academic/ugene: Updated for version 1.31.1.	2018-12-24 22:17:00 +07:00
umfpack	academic/umfpack: Updated for version 5.7.8.	2019-01-05 07:49:29 +07:00
units	academic/units: Updated for version 2.18.	2018-11-10 07:46:57 +07:00
vcftools	academic/vcftools: Updated for version 0.1.16.	2018-12-24 22:16:53 +07:00
verilog
veusz	academic/veusz: Fix build against new Qt5.	2018-09-23 06:11:51 +07:00
ViennaRNA	academic/ViennaRNA: Updated for version 2.4.12.	2019-05-17 23:13:01 +07:00
wehi-cellsymphony
wehi-deid
wehi-hackit
wehi-weasel	academic/wehi-weasel: Updated for version 3.5.0.17.	2018-12-24 22:16:53 +07:00
WEVOTE	academic/WEVOTE: Added (WEighted VOting Taxonomic idEntification).	2018-12-24 08:52:55 +07:00
wmcalc	academic/wmcalc: Updated for version 0.7.	2018-09-15 19:23:41 +01:00
WordNet
wxmacmolplt
wxMaxima	academic/wxMaxima: Switch homepage to https.	2018-10-06 07:25:18 +07:00
xcircuit
xephem
xflr5	academic/xflr5: Updated for version 6.43.	2019-02-01 23:55:33 +07:00
xfoil
xiphos
xoscope
Xyce
z3	academic/z3: Added (theorem solver).	2019-03-23 07:25:53 +07:00
ZeGrapher
zotero	academic/zotero: Updated for version 5.0.66.	2019-04-27 04:53:03 +07:00