mirror of
https://github.com/SlackBuildsOrg/slackbuilds
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529d47241a
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org> |
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| .. | ||
| README | ||
| README.SLACKWARE | ||
| References | ||
| RepeatMasker.info | ||
| RepeatMasker.SlackBuild | ||
| slack-desc | ||
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences. The output of the program is a detailed annotation of the repeats that are present in the query sequence as well as a modified version of the query sequence in which all the annotated repeats have been masked (default: replaced by Ns). Currently over 56% of human genomic sequence is identified and masked by the program. Sequence comparisons in RepeatMasker are performed by one of several popular search engines including: - nhmmer (part of 'HMMER', available on SBo) - Cross_Match. Due to licensing, you should obtain this yourself: http://www.phrap.org - ABBlast/WUBlast. Due to licensing, you should obtain this yourself: https://blast.advbiocomp.com/licensing/ - RMBlast (found as 'ncbi-rmblastn' on SBo) RepeatMasker makes use of curated libraries of repeats and currently supports Dfam (profile HMM library derived from Repbase sequences) and Repbase, a service of the Genetic Information Research Institute. WARNING! Due to the bundled databases, the installed size of this is 2.1 GB! NOTE! The package is installed in /opt. After install go fo /opt/RepeatMasker and run the RepeatMasker Configuration Program: # perl ./configure See README.SLACKWARE for details.