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academic/t_coffee: Updated for version 13.41.0_git28bdc39.

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Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
This commit is contained in:
Petar Petrov 2020-01-05 02:40:28 -06:00 committed by Willy Sudiarto Raharjo
parent a2a01fba9a
commit d5abeff5f5
No known key found for this signature in database
GPG key ID: 887B8374D7333381
3 changed files with 13 additions and 18 deletions
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4
academic/t_coffee/slack-desc
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@ -13,7 +13,7 @@ t_coffee: T-Coffee to align sequences or to combine the output of your
t_coffee: favorite alignment methods (Clustal, Mafft, Probcons, Muscle...)
t_coffee: into one unique alignment (M-Coffee).
t_coffee:
t_coffee: Home: http://www.tcoffee.org/
t_coffee: References: /usr/doc/t_coffee-11.00.8cbe486/References
t_coffee: Homepage: http://www.tcoffee.org/
t_coffee:
t_coffee:
t_coffee:

21
academic/t_coffee/t_coffee.SlackBuild
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@ -2,7 +2,7 @@
# Slackware build script for t_coffee
# Copyright 2013-2019 Petar Petrov slackalaxy@gmail.com
# Copyright 2013-2020 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
@ -23,12 +23,13 @@
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=t_coffee
TARNAM=tcoffee
VERSION=${VERSION:-13.00_git33cdeb8}
COMMIT=33cdeb86ffb77fe142ccf7a3ee568340b7583f7f
VERSION=${VERSION:-13.41.0_git28bdc39}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
TARNAM=tcoffee
COMMIT=28bdc39911d10d8597db8513f9515fb2ed7a9158
if [ -z "$ARCH" ]; then
case "$( uname -m )" in
i?86) ARCH=i586 ;;
@ -71,17 +72,11 @@ find -L . \
\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
cd compile
# Use our CFLAGS
sed -i "/^CFLAGS/s/=/+=/" makefile
sed -i "/^CFLAGS/s/=/+=/" t_coffee/src/makefile
CFLAGS="$SLKCFLAGS" \
make all
install -D -m755 $PRGNAM $PKG/usr/bin/$PRGNAM
cd -
CFLAGS="$SLKCFLAGS" make t_coffee -C t_coffee/src
install -D -m755 t_coffee/src/$PRGNAM $PKG/usr/bin/$PRGNAM
find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true

6
academic/t_coffee/t_coffee.info
View file

@ -1,8 +1,8 @@
PRGNAM="t_coffee"
VERSION="13.00_git33cdeb8"
VERSION="13.41.0_git28bdc39"
HOMEPAGE="http://www.tcoffee.org/"
DOWNLOAD="https://github.com/cbcrg/tcoffee/archive/33cdeb8/tcoffee-33cdeb86ffb77fe142ccf7a3ee568340b7583f7f.tar.gz"
MD5SUM="7818cfe47cbe6dc7c0ab669b72c5d8db"
DOWNLOAD="https://github.com/cbcrg/tcoffee/archive/28bdc39/tcoffee-28bdc39911d10d8597db8513f9515fb2ed7a9158.tar.gz"
MD5SUM="3392d55a2817575ce90c1c3e94e08c0b"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""