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academic/wehi-deid: Added (Flow cytometry De-Identifier).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
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9
academic/wehi-deid/README
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academic/wehi-deid/README
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Flow cytometry De-Identifier
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Where flow cytometry data files from the clinic are to be used in
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research projects, DeID is used to remove patient identification. This
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is achieved by writing a copy of the data file with selected keyword
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values removed.
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DeID has been revised (July 2013) to enable processing of multi-block
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data files.
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3
academic/wehi-deid/doinst.sh
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academic/wehi-deid/doinst.sh
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if [ -x /usr/bin/update-desktop-database ]; then
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/usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1
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fi
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19
academic/wehi-deid/slack-desc
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academic/wehi-deid/slack-desc
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# HOW TO EDIT THIS FILE:
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# The "handy ruler" below makes it easier to edit a package description.
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# Line up the first '|' above the ':' following the base package name, and
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# the '|' on the right side marks the last column you can put a character in.
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# You must make exactly 11 lines for the formatting to be correct. It's also
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# customary to leave one space after the ':' except on otherwise blank lines.
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|-----handy-ruler------------------------------------------------------|
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wehi-deid: wehi-deid (Flow cytometry De-Identifier)
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wehi-deid:
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wehi-deid: Where flow cytometry data files from the clinic are to be used in
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wehi-deid: research projects, DeID is used to remove patient identification.
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wehi-deid: This is achieved by writing a copy of the data file with selected
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wehi-deid: keyword values removed.
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wehi-deid:
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wehi-deid: Home: http://www.frankbattye.com.au/freesoftware.html
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wehi-deid:
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wehi-deid:
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wehi-deid:
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58
academic/wehi-deid/wehi-deid.SlackBuild
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academic/wehi-deid/wehi-deid.SlackBuild
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#!/bin/sh
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# Slackware build script for wehi-deid
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# Copyright 2016 Petar Petrov slackalaxy@gmail.com
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# All rights reserved.
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#
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# Redistribution and use of this script, with or without modification, is
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# permitted provided that the following conditions are met:
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#
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# 1. Redistributions of this script must retain the above copyright
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# notice, this list of conditions and the following disclaimer.
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#
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# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
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# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
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# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
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# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
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# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
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# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
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# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
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# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
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# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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PRGNAM=wehi-deid
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VERSION=${VERSION:-20130720}
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BUILD=${BUILD:-1}
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TAG=${TAG:-_SBo}
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ARCH=noarch
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SRCNAM=DeID
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CWD=$(pwd)
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TMP=${TMP:-/tmp/SBo}
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PKG=$TMP/package-$PRGNAM
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OUTPUT=${OUTPUT:-/tmp}
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set -e
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rm -rf $PKG
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mkdir -p $TMP $PKG $OUTPUT
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cd $TMP
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install -D -m755 $CWD/$SRCNAM.jar $PKG/usr/bin/$PRGNAM.jar
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mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
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cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
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mkdir -p $PKG/usr/share/{applications,pixmaps}
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cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications
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cp $CWD/$PRGNAM.png $PKG/usr/share/pixmaps
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mkdir -p $PKG/install
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cat $CWD/slack-desc > $PKG/install/slack-desc
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cat $CWD/doinst.sh > $PKG/install/doinst.sh
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cd $PKG
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/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
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8
academic/wehi-deid/wehi-deid.desktop
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academic/wehi-deid/wehi-deid.desktop
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[Desktop Entry]
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Type=Application
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Exec=java -jar /usr/bin/wehi-deid.jar
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Terminal=false
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Name=Flow cytometry DeID
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Comment=Flow cytometry De-Identifier
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Icon=wehi-deid.png
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Categories=Education;
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10
academic/wehi-deid/wehi-deid.info
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academic/wehi-deid/wehi-deid.info
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PRGNAM="wehi-deid"
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VERSION="20130720"
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HOMEPAGE="http://www.frankbattye.com.au/freesoftware.html"
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DOWNLOAD="http://www.frankbattye.com.au/downloads/DeID.jar"
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MD5SUM="bd938d07b0471cf9ed9f32b778ded63d"
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DOWNLOAD_x86_64=""
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MD5SUM_x86_64=""
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REQUIRES="jdk"
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MAINTAINER="Petar Petrov"
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EMAIL="slackalaxy@gmail.com"
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BIN
academic/wehi-deid/wehi-deid.png
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BIN
academic/wehi-deid/wehi-deid.png
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