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academic/vcftools: Updated for version 0.1.12a.

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Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
This commit is contained in:
Petar Petrov 2014-04-09 17:19:20 +07:00 committed by Willy Sudiarto Raharjo
parent 284a215b9f
commit 488f7c2161
4 changed files with 20 additions and 16 deletions
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17
academic/vcftools/make.patch
View file

@ -1,15 +1,18 @@
Description: do not use MAKEFLAGS
Description: do not use MAKEFLAGS and not MANDIR
Author: Thorsten Alteholz <debian@alteholz.de>
Last-Update: 2011-07-03
Index: vcftools-0.1.7/Makefile
Last-Update: 2014-04-03
Index: vcftools_0.1.12/Makefile
===================================================================
--- vcftools_0.1.7.org/Makefile 2011-07-04 15:22:33.000000000 +0200
+++ vcftools_0.1.7/Makefile 2011-07-04 15:22:56.000000000 +0200
@@ -22,7 +22,7 @@
--- vcftools_0.1.12.orig/Makefile 2014-04-04 10:37:59.000000000 +0200
+++ vcftools_0.1.12/Makefile 2014-04-04 10:38:34.000000000 +0200
@@ -25,9 +25,8 @@
DIRS = cpp perl
install:
@mkdir -p $(BINDIR); mkdir -p $(MODDIR); \
- @mkdir -p $(BINDIR); mkdir -p $(MODDIR); mkdir -p $(MANDIR); \
- cp ${PREFIX}/cpp/vcftools.1.gz $(MANDIR); \
- for dir in $(DIRS); do cd $$dir && $(MAKE) $(MAKEFLAGS) && cd ..; done
+ @mkdir -p $(BINDIR); mkdir -p $(MODDIR); \
+ for dir in $(DIRS); do cd $$dir && $(MAKE) && cd ..; done
clean:

2
academic/vcftools/slack-desc
View file

@ -15,5 +15,5 @@ vcftools: VCF files: validating, merging, comparing and calculate some
vcftools: basic population genetic statistics.
vcftools:
vcftools: Home: http://vcftools.sourceforge.net/
vcftools: References: /usr/doc/vcftools-0.1.11/References
vcftools: References: /usr/doc/vcftools-0.1.12a/References
vcftools:

11
academic/vcftools/vcftools.SlackBuild
View file

@ -2,7 +2,7 @@
# Slackware build script for vcftools
# Copyright 2013 Petar Petrov, petar.petrov@student.oulu.fi
# Copyright 2013-2014 Petar Petrov, petar.petrov@student.oulu.fi
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
@ -23,7 +23,7 @@
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=vcftools
VERSION=${VERSION:-0.1.11}
VERSION=${VERSION:-0.1.12a}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
@ -83,6 +83,9 @@ CPPFLAGS="$SLKCFLAGS" \
PREFIX=$PKG/usr \
make install
# Copy man page
install -D -m644 cpp/vcftools.1.gz $PKG/usr/man/man1/vcftools.1.gz
# Copy examples
mkdir -p $PKG/usr/share/$PRGNAM
cp -a examples $PKG/usr/share/$PRGNAM
@ -91,9 +94,7 @@ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | gr
| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
cp -a \
README.txt perl/ChangeLog website/*.pdf \
$PKG/usr/doc/$PRGNAM-$VERSION
cp -a README.txt perl/ChangeLog website/*.pdf $PKG/usr/doc/$PRGNAM-$VERSION
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References

6
academic/vcftools/vcftools.info
View file

@ -1,8 +1,8 @@
PRGNAM="vcftools"
VERSION="0.1.11"
VERSION="0.1.12a"
HOMEPAGE="http://vcftools.sourceforge.net/"
DOWNLOAD="http://sourceforge.net/projects/vcftools/files/vcftools_0.1.11.tar.gz"
MD5SUM="ddb49e9fa2bfedae36b4dce163adfaa8"
DOWNLOAD="http://sourceforge.net/projects/vcftools/files/vcftools_0.1.12a.tar.gz"
MD5SUM="ca2ab768ed741623263dbe123cac428b"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""