academic/lalnview: various build fixes / tweaks

Signed-off-by: Robby Workman <rworkman@slackbuilds.org>

academic/lalnview/References

@@ -1,5 +1,3 @@
-References:
-
 Duret, L., Gasteiger, E. and Perrière, G. (1996) LalnView: a graphical
 viewer for pairwise sequence alignments. Comput. Applic. Biosci.,
 12, 507-510

academic/lalnview/lalnview.SlackBuild

@@ -1,16 +1,32 @@
 #!/bin/sh
 
 # Slackware build script for lalnview
-# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and 
-# hereby submitted to the public domain
 
-# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING 
-# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_ 
-# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT.
+# Copyright 2011  Petar Petrov, ppetrov@paju.oulu.fi
+# All rights reserved.
+#
+# Redistribution and use of this script, with or without modification, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+#    notice, this list of conditions and the following disclaimer.
+#
+#  THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
+#  WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+#  MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO
+#  EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+#  SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+#  PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+#  OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+#  WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+#  OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+#  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+# Thanks to Niels Horn for correcting the CFLAGS.
 
 PRGNAM=lalnview		
 VERSION=${VERSION:-3.0}	
-BUILD=${BUILD:-1}
+BUILD=${BUILD:-2}
 TAG=${TAG:-_SBo}	
 
 if [ -z "$ARCH" ]; then
@@ -56,20 +72,22 @@ find . \
  \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \
  -exec chmod 644 {} \;
 
-OPT="$SLKCFLAGS" \
-  make
-install -D -m755 lalnview $PKG/usr/bin/lalnview
+# Point to the correct place of lalnview.help
+sed -i "s:lalnview.help:/usr/doc/$PRGNAM-$VERSION/lalnview.help:" MF_MainWindow.cxx
+
+OPT="$SLKCFLAGS" make
+install -D -m755 lalnview $PKG/usr/bin/$PRGNAM
 
 find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
   | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
 
-# Menu item and icon (couldn't find an icon, so i made one myself. I know it sucks.)
+# Couldn't find an icon, so i made one myself. I know it sucks.
 mkdir -p $PKG/usr/share/{applications,pixmaps}
 cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications
 cp $CWD/$PRGNAM.png $PKG/usr/share/pixmaps
 
 mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
-cp lalnview.help $PKG/usr/doc/$PRGNAM-$VERSION
+cp -a lalnview.help $PKG/usr/doc/$PRGNAM-$VERSION
 cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
 cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References
 

academic/lalnview/lalnview.desktop

@@ -1,7 +1,7 @@
 [Desktop Entry]
 Categories=Education;
 Exec=lalnview
-Icon=lalnview.png
-Name=Lalnview
+Icon=lalnview
+Name=LalnView
 StartupNotify=false
 Type=Application

academic/lalnview/lalnview.info

@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
 MD5SUM_x86_64=""
 MAINTAINER="Petar Petrov"
 EMAIL="ppetrov@paju.oulu.fi"
-APPROVED="Niels Horn"
+APPROVED="rworkman"

academic/lalnview/slack-desc

@@ -11,9 +11,9 @@ lalnview:
 lalnview: LalnView is a graphical program for visualizing local alignments
 lalnview: between two sequences (protein or nucleic acids).
 lalnview:
-lalnview:
-lalnview:
-lalnview:
-lalnview:
 lalnview: References: /usr/doc/lalnview-$VERSION/References
 lalnview: Home: http://pbil.univ-lyon1.fr/software/lalnview.html
+lalnview:
+lalnview:
+lalnview:
+lalnview: